Longest Common Extension / LCE | Set 1 (Introduction and Naive Method)

The Longest Common Extension (LCE) problem considers a string s and computes, for each pair (L , R), the longest sub string of s that starts at both L and R. In LCE, in each of the query we have to answer the length of the longest common prefix starting at indexes L and R.

Example:

String : “abbababba”
Queries: LCE(1, 2), LCE(1, 6) and LCE(0, 5)

Find the length of the Longest Common Prefix starting at index given as, (1, 2), (1, 6) and (0, 5).

The string highlighted “green” are the longest common prefix starting at index- L and R of the respective queries. We have to find the length of the longest common prefix starting at index- (1, 2), (1, 6) and (0, 5). Algorithm (Naive Method)

1. For each of the LCE queries of the form – LCE(L, R) do the following:
• Initialise the LCE ‘length’ as 0
• Start comparing the prefix starting from index- L and R character by character.
• If the characters matches, then this character is in our Longest Common Extension. So increment ‘length’ (length++).
• Else if the characters mismatch, then return this ‘length’.
2. The returned ‘length’ will be the required LCE(L, R).

Implementation :

Below is C++ implementation of above Naive algorithm.

 // A C++ Program to find the length of longest // common extension using Naive Method #include using namespace std;    // Structure to represent a query of form (L,R) struct Query {     int L, R; };    // A utility function to find longest common // extension from index - L and index - R int LCE(string str, int n, int L, int R) {     int length = 0;        while (str[L+length] == str[R+length] &&             R+length < n)         length++;        return(length); }    // A function to answer queries of longest // common extension void LCEQueries(string str, int n, Query q[],                                        int m) {     for (int i=0; i

Output:

LCE(1, 2) = 1
LCE(1, 6) = 3
LCE(0, 5) = 4

Analysis of Naive Method

Time Complexity: The time complexity is O(Q.N), where
Q = Number of LCE Queries
N = Length of the input string

One may be surprised that the although having a greater asymptotic time complexity, the naive method outperforms other efficient method(asymptotically) in practical uses. We will be discussing this in coming sets on this topic.

Auxiliary Space: O(1), in-place algorithm.

Applications:

1. K-Mismatch Problem->Landau-Vishkin uses LCE as a subroutine to solve k-mismatch problem
2. Approximate String Searching.
3. Palindrome Matching with Wildcards.
4. K-Difference Global Alignment.

In the next sets we will discuss how LCE (Longest Common Extension) problem can be reduced to a RMQ (Range Minimum Query). We will also discuss more efficient methods to find the longest common extension.

Reference :

• http://www.sciencedirect.com/science/article/pii/S1570866710000377
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